For those of you with a B6 S4 (some early B7s??) with the vacuum actuated flap on the stock exhaust and have added an aftermarket exhaust it may not be sufficient to just plug the vacuum lines to the mufflers.
With this system there is a vacuum accumulator deally in the trunk on the driver’s side (behind side panel). With the back seats folded down you can hear it bleed off a bit of pressure when the rpms drop below 1700. I’ve had a suspicion the car was not running perfectly for a short while now and this past week I had my seats folded down and could hear the accumulator but is sounded broken so I pulled the side panel off, removed the ridiculously elaborate bit of nonsense and capped the line from the motor very thoroughly.
The car is now much smoother at idle, requires much less throttle when pulling away and is generally running smoother.
Coles notes: Remove the POS and cap the line well if you have a B6 and an aftermarket exhaust. Peace.